chr15:78559273:G>A Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr15:78,851,615-78,851,615 View the variant detail on this assembly version. |
| hg38 | chr15:78,559,273-78,559,273 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.022 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | nicotine dependence | Single-nucleotide polymorphisms rs421629 on 5p15.33 and rs1948, rs660652, rs8040... | BeFree | 22945651 | Detail |
| 0.015 | Carcinoma of lung | Single-nucleotide polymorphisms rs421629 on 5p15.33 and rs1948, rs660652, rs8040... | BeFree | 22945651 | Detail |
| 0.155 | Malignant neoplasm of lung | Single-nucleotide polymorphisms rs421629 on 5p15.33 and rs1948, rs660652, rs8040... | BeFree | 22945651 | Detail |
| 0.179 | Malignant neoplasm of lung | Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confi... | BeFree | 20554942 | Detail |
| 0.010 | Carcinoma of lung | Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confi... | BeFree | 20554942 | Detail |
| 0.134 | Malignant neoplasm of lung | Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confi... | BeFree | 20554942 | Detail |
| 0.002 | Carcinoma of lung | Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confi... | BeFree | 20554942 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Single-nucleotide polymorphisms rs421629 on 5p15.33 and rs1948, rs660652, rs8040868 and rs2036527 on... | DisGeNET | Detail |
| Single-nucleotide polymorphisms rs421629 on 5p15.33 and rs1948, rs660652, rs8040868 and rs2036527 on... | DisGeNET | Detail |
| Single-nucleotide polymorphisms rs421629 on 5p15.33 and rs1948, rs660652, rs8040868 and rs2036527 on... | DisGeNET | Detail |
| Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confidence interval [CI] ... | DisGeNET | Detail |
| Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confidence interval [CI] ... | DisGeNET | Detail |
| Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confidence interval [CI] ... | DisGeNET | Detail |
| Associations of SNPs in LOC123688 (rs10519203; odds ratio [OR] = 1.60, 95% confidence interval [CI] ... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs2036527 dbSNP
- Genome
- hg38
- Position
- chr15:78,559,273-78,559,273
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs2036527
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0218
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 366
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
Genome browser